STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_0046Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dvu:DVU1995 anti-anti-sigma factor. (117 aa)    
Predicted Functional Partners:
Mboo_1160
KEGG: mhu:Mhun_0063 putative anti-sigma regulatory factor (serine/threonine protein kinase).
 
 
 0.958
Mboo_1022
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: ctr:CT549 sigma regulatory factor-histidine kinase.
 
 
 0.957
Mboo_1652
PFAM: histidine kinase, HAMP region domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: mhu:Mhun_0060 serine phosphatase.
 
 
 0.932
Mboo_0643
Stage II sporulation E family protein; PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: mhu:Mhun_0060 serine phosphatase.
 
 
 0.929
Mboo_1494
PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: sus:Acid_0529 putative anti-sigma regulatory factor, serine/threonine protein kinase.
  
 
 0.873
Mboo_1495
PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sus:Acid_0530 putative anti-sigma regulatory factor, serine/threonine protein kinase.
  
 
 0.873
Mboo_0048
PFAM: GCN5-related N-acetyltransferase; KEGG: rpe:RPE_3904 putative anti-sigma regulatory factor, serine/threonine protein kinase.
 
     0.826
Mboo_1161
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mhu:Mhun_3235 anti-sigma-factor antagonist (STAS) domain protein.
  
     0.689
Mboo_0047
PFAM: Sulfate transporter/antisigma-factor antagonist STAS.
      
0.581
Mboo_0038
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mhu:Mhun_2410 hypothetical protein.
  
    0.565
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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