STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_0065PFAM: GPR1/FUN34/yaaH family protein; KEGG: gme:Gmet_1126 GPR1/FUN34/YaaH. (196 aa)    
Predicted Functional Partners:
Mboo_0066
TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: mhu:Mhun_0352 acetate--CoA ligase.
  
  
 0.762
Mboo_1681
PFAM: AMP-dependent synthetase and ligase; KEGG: mhu:Mhun_0592 AMP-dependent synthetase and ligase.
  
  
 0.498
Mboo_1682
PFAM: AMP-dependent synthetase and ligase; KEGG: mhu:Mhun_2392 AMP-dependent synthetase and ligase.
  
  
 0.498
Mboo_0915
TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: mbu:Mbur_1137 acetate--CoA ligase.
  
  
 0.410
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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