STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_0167PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: mka:MK0601 homolog of ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, periplasmic component. (385 aa)    
Predicted Functional Partners:
Mboo_0163
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A2163 ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit.
 
  
 0.878
Mboo_0164
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO7545 putative ABC-transport protein, ATP-binding component.
  
 0.869
Mboo_0736
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mmp:MMP1197 transport permease protein.
 
  
 0.869
Mboo_2012
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nfa:nfa19550 putative ABC transporter membrane protein.
 
  
 0.867
Mboo_2011
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro04944 ABC transporter, ATP-binding component.
  
 0.864
Mboo_0735
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mhu:Mhun_0087 ABC transporter related.
  
 0.862
Mboo_0166
PFAM: protein of unknown function DUF214; KEGG: tde:TDE1518 permease, putative.
 
   
 0.569
mer
5,10-methylenetetrahydromethanopterin reductase; Catalyzes the reversible reduction of methylene-H(4)MPT to methyl-H(4)MPT; Belongs to the mer family.
  
  
 0.569
Mboo_0168
Aminotransferase, class I and II; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; KEGG: sus:Acid_3616 aminotransferase, class I and II.
 
   
 0.532
Mboo_1466
PFAM: NADPH-dependent FMN reductase; KEGG: rfr:Rfer_2368 NADPH-dependent FMN reductase.
  
  
 0.522
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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