STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_0275PFAM: phosphoribulokinase/uridine kinase; KEGG: mhu:Mhun_0794 phosphoribulokinase/uridine kinase. (321 aa)    
Predicted Functional Partners:
rbcL
Ribulose-bisphosphate carboxylase; Catalyzes the addition of molecular CO(2) and H(2)O to ribulose 1,5-bisphosphate (RuBP), generating two molecules of 3- phosphoglycerate (3-PGA). Functions in an archaeal AMP degradation pathway, together with AMP phosphorylase and R15P isomerase. Belongs to the RuBisCO large chain family. Type III subfamily.
 
   
 0.889
gap
KEGG: mhu:Mhun_2462 glyceraldehyde-3-phosphate dehydrogenase, type II; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type II; PFAM: glyceraldehyde 3-phosphate dehydrogenase; dihydrodipicolinate reductase.
  
 
 0.874
Mboo_1283
PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: cya:CYA_0020 glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
 
 0.862
Mboo_2367
PFAM: protein kinase; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; Tetratricopeptide domain protein; KEGG: ter:Tery_3996 tetratricopeptide TPR_2.
  
 0.860
Mboo_1970
PFAM: protein kinase; periplasmic copper-binding; SMART: tyrosine protein kinase; serine/threonine protein kinase; Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: mhu:Mhun_0317 serine/threonine protein kinase.
  
 0.765
Mboo_0434
PFAM: protein of unknown function RIO1; protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: lbu:LBUL_1306 serine/threonine protein kinase with beta-lactam (PASTA) domains.
  
 0.764
Mboo_0635
KEGG: eci:UTI89_C2346 hypothetical protein YegI.
  
 0.764
Mboo_0750
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; Parallel beta-helix repeat; KEGG: pfu:PF0655 serine/threonine-protein kinase.
  
 0.764
Mboo_1321
PFAM: protein kinase; SMART: serine/threonine protein kinase; KEGG: mhu:Mhun_2725 uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains-like.
  
 0.764
Mboo_2020
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: ath:At1g72190 oxidoreductase family protein.
   
 0.756
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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