STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_0342PFAM: PBS lyase HEAT domain protein repeat-containing protein; KEGG: mtp:Mthe_0811 PBS lyase heat domain protein repeat-containing protein. (101 aa)    
Predicted Functional Partners:
eIF5A
Translation initiation factor eIF-5A; Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family.
  
 0.892
Mboo_0125
PFAM: PBS lyase HEAT domain protein repeat-containing protein; KEGG: mba:Mbar_A0933 hypothetical protein.
 
     0.696
Mboo_1862
PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: mba:Mbar_A0933 hypothetical protein.
  
     0.686
Mboo_0184
TIGRFAM: putative deoxyhypusine synthase; PFAM: deoxyhypusine synthase; KEGG: mhu:Mhun_2546 deoxyhypusine synthase, putative.
  
 
 0.523
Mboo_1854
PFAM: WD-40 repeat protein; KEGG: ter:Tery_3923 WD-40 repeat.
 
  
 0.521
rps8e
TIGRFAM: ribosomal protein S8e; PFAM: ribosomal protein S8E; KEGG: mhu:Mhun_2485 ribosomal protein S8.e.
   
    0.487
Mboo_2103
TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Nucleolar GTP-binding 1; KEGG: mhu:Mhun_2933 GTP-binding protein, HSR1-related.
   
    0.468
rpl10
Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
   
  
 0.466
pyrG
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
  
   0.460
Mboo_0516
PFAM: Pre-mRNA processing ribonucleoprotein, binding region; KEGG: mhu:Mhun_2265 pre-mRNA processing ribonucleoprotein, binding region.
   
  
 0.459
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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