STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_0369PFAM: DNA polymerase, beta domain protein region; KEGG: mac:MA2131 nucleotidyltransferase. (105 aa)    
Predicted Functional Partners:
Mboo_0370
PFAM: protein of unknown function DUF86; KEGG: mac:MA0101 hypothetical protein.
 
  
 0.889
Mboo_0348
PFAM: DNA polymerase, beta domain protein region; KEGG: mac:MA0102 nucleotidyltransferase.
 
     0.689
Mboo_0373
PFAM: protein of unknown function DUF86; KEGG: tte:TTE0752 hypothetical protein.
 
  
 0.507
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.