STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_0389PFAM: regulatory protein, MarR; KEGG: fnu:FN0681 transcriptional regulator, MarR family. (155 aa)    
Predicted Functional Partners:
Mboo_0388
PFAM: major facilitator superfamily MFS_1; KEGG: bte:BTH_II2230 drug resistance transporter, EmrB/QacA family protein, putative.
     
 0.677
Mboo_0390
PFAM: nitroreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mba:Mbar_A3287 nitroreductase.
 
  
 0.601
Mboo_0387
PFAM: beta-lactamase domain protein; KEGG: hma:rrnAC3474 metallo-beta-lactamase superfamily protein.
  
  
 0.563
Mboo_0386
Transcriptional regulator, HxlR family; PFAM: helix-turn-helix, HxlR type; KEGG: mhu:Mhun_1541 putative transcriptional regulator.
  
  
 0.476
Mboo_1858
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: mhu:Mhun_1953 MATE efflux family protein.
 
  
 0.424
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.