STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_0462Hypothetical protein; KEGG: mhu:Mhun_2469 histidine kinase, HAMP region. (225 aa)    
Predicted Functional Partners:
Mboo_0463
PFAM: PEGA domain protein; KEGG: mhu:Mhun_3001 PEGA.
 
     0.806
Mboo_0461
PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: mtp:Mthe_0045 peptidylprolyl isomerase.
       0.603
Mboo_0460
PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: mtp:Mthe_0045 peptidylprolyl isomerase.
       0.478
Mboo_0464
Putative transcriptional regulator, GntR family; PFAM: aminotransferase, class I and II; KEGG: mhu:Mhun_1460 aminotransferase, class I and II.
       0.476
Mboo_1309
PFAM: formylmethanofuran dehydrogenase, subunit E region; KEGG: mhu:Mhun_1985 formylmethanofuran dehydrogenase, subunit E region.
  
     0.438
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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