STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_0502KEGG: mhu:Mhun_2356 hypothetical protein. (178 aa)    
Predicted Functional Partners:
Mboo_0501
KEGG: mhu:Mhun_2355 MiaB-like tRNA modifying enzyme; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB.
       0.576
Mboo_0500
Aspartate dehydrogenase; PFAM: oxidoreductase domain protein; dihydrodipicolinate reductase; aspartate dehydrogenase; homoserine dehydrogenase, NAD-binding; KEGG: mhu:Mhun_2354 aspartate dehydrogenase.
       0.420
Mboo_0503
Thiamine pyrophosphate enzyme domain protein TPP-binding; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
       0.416
Mboo_0504
PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: mhu:Mhun_2359 pyruvate ferredoxin/flavodoxin oxidoreductase.
       0.416
Mboo_0505
PFAM: DNA methylase N-4/N-6 domain protein; KEGG: mhu:Mhun_2937 DNA methylase N-4/N-6.
       0.404
Mboo_0499
Nicotinate-nucleotide pyrophosphorylase; Involved in the catabolism of quinolinic acid (QA). Belongs to the NadC/ModD family.
       0.401
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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