STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_0559PFAM: GCN5-related N-acetyltransferase; KEGG: mhu:Mhun_0456 GCN5-related N-acetyltransferase. (142 aa)    
Predicted Functional Partners:
Mboo_0560
KEGG: mac:MA1791 hypothetical protein.
 
     0.855
Mboo_0557
PFAM: protein of unknown function DUF106, transmembrane; KEGG: mhu:Mhun_2228 protein of unknown function DUF106, transmembrane.
       0.459
cmk
TIGRFAM: cytidylate kinase, putative; KEGG: mhu:Mhun_2227 cytidylate kinase, putative.
       0.459
adkA
KEGG: mhu:Mhun_2229 adenylate kinase; Belongs to the archaeal adenylate kinase family.
       0.458
rpl23
Ribosomal protein L25/L23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family.
 
   
 0.427
rpl30
TIGRFAM: ribosomal protein L30P; PFAM: ribosomal protein L30; KEGG: mhu:Mhun_2232 ribosomal protein L30P.
   
 
 0.421
Mboo_0293
PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: sat:SYN_02719 flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase.
 
     0.411
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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