STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_0580PFAM: Radical SAM domain protein; KEGG: mhu:Mhun_1560 radical SAM. (389 aa)    
Predicted Functional Partners:
Mboo_0581
PFAM: protein of unknown function DUF169; KEGG: mhu:Mhun_0901 protein of unknown function DUF169.
 
     0.617
secD
SecD/SecF/SecDF export membrane protein; Involved in protein export.
 
   
 0.578
Mboo_2124
KEGG: mbu:Mbur_0290 hypothetical protein.
  
     0.482
secF
SecD/SecF/SecDF export membrane protein; Involved in protein export.
 
   
 0.479
Mboo_0679
Origin recognition complex subunit; Involved in regulation of DNA replication.
  
     0.463
Mboo_0112
KEGG: sth:STH1160 Holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: RuvA domain protein; DNA recombination protein RuvA, domain I; SMART: Helix-hairpin-helix DNA-binding, class 1.
 
     0.454
tgtA
tRNA-guanine transglycosylase, various specificities; Exchanges the guanine residue with 7-cyano-7-deazaguanine (preQ0) at position 15 in the dihydrouridine loop (D-loop) of archaeal tRNAs; Belongs to the archaeosine tRNA-ribosyltransferase family.
 
     0.444
Mboo_0181
PFAM: protein of unknown function DUF105; cysteine-rich small domain; KEGG: mhu:Mhun_2543 protein of unknown function DUF105.
 
     0.427
Mboo_2270
PFAM: protein of unknown function DUF549; KEGG: mhu:Mhun_0610 protein of unknown function DUF549.
  
     0.422
Mboo_0111
TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; KEGG: mhu:Mhun_0890 crossover junction endodeoxyribonuclease RuvC.
 
   
 0.407
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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