STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_0655TIGRFAM: tRNA intron endonuclease; PFAM: tRNA intron endonuclease, catalytic-like; KEGG: mhu:Mhun_1733 tRNA intron endonuclease. (352 aa)    
Predicted Functional Partners:
dnaG
TOPRIM domain protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
  
 
   0.846
Mboo_0656
tryptophanyl-tRNA synthetase; KEGG: mhu:Mhun_1732 tryptophan--tRNA ligase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib.
     
 0.822
pheT
TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase, B5; KEGG: mhu:Mhun_1728 phenylalanyl-tRNA synthetase, beta subunit.
 
     0.789
cca
tRNA adenylyltransferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate.
 
   
 0.754
pheS
KEGG: mhu:Mhun_1729 phenylalanyl-tRNA synthetase, alpha subunit; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase, class IIc; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 2 subfamily.
       0.746
Mboo_2236
PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: mhu:Mhun_2510 phosphoesterase, RecJ-like.
  
     0.654
spt5
Ribosomal protein L24; Stimulates transcription elongation; Belongs to the archaeal Spt5 family.
 
     0.625
Mboo_1678
PFAM: metallophosphoesterase; KEGG: mhu:Mhun_0595 metallophosphoesterase.
  
     0.621
Mboo_0179
PFAM: nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: mhu:Mhun_2542 nucleic acid binding, OB-fold, tRNA/helicase-type.
 
     0.603
Mboo_1828
PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: mhu:Mhun_2276 phosphoesterase, RecJ-like.
  
     0.598
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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