STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_0691KEGG: mhu:Mhun_1600 hypothetical protein. (647 aa)    
Predicted Functional Partners:
Mboo_0694
PFAM: amine oxidase; KEGG: mhu:Mhun_1597 amine oxidase.
 
    0.958
Mboo_0692
PFAM: conserved hypothetical protein 374; KEGG: mhu:Mhun_1599 conserved hypothetical protein 374.
 
  
 0.884
Mboo_0693
PFAM: glycosyl transferase, family 2; KEGG: mhu:Mhun_1598 glycosyl transferase, family 2.
 
  
 0.801
Mboo_0697
PFAM: glycosyl transferase, family 39; KEGG: mhu:Mhun_1594 glycosyl transferase, family 39.
 
     0.779
Mboo_1446
PFAM: amine oxidase; KEGG: mhu:Mhun_0121 amine oxidase.
 
    0.759
Mboo_0796
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mba:Mbar_A2721 hypothetical protein.
   
    0.757
cetZ
Tubulin/FtsZ, GTPase; Involved in cell shape control; Belongs to the CetZ family.
 
     0.677
Mboo_0304
PFAM: ribonuclease III; KEGG: mhu:Mhun_1116 ribonuclease III.
  
    0.664
Mboo_0608
PFAM: ribonuclease III; KEGG: lip:LI0571 dsRNA-specific ribonuclease.
  
    0.664
Mboo_2254
PFAM: GCN5-related N-acetyltransferase; KEGG: bcl:ABC1441 acetyltransferase, GNAT family.
 
    0.601
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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