STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_0749FHA domain containing protein; PFAM: regulatory protein, ArsR; KEGG: mhu:Mhun_0316 transcriptional regulator, ArsR family. (256 aa)    
Predicted Functional Partners:
rpl40e
PFAM: Ribosomal protein L40e; KEGG: mhu:Mhun_2870 ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.
   
 0.852
Mboo_0750
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; Parallel beta-helix repeat; KEGG: pfu:PF0655 serine/threonine-protein kinase.
   
 
 0.681
Mboo_0705
KEGG: mhu:Mhun_2263 hypothetical protein.
   
 0.618
Mboo_1675
KEGG: mhu:Mhun_2263 hypothetical protein.
   
 0.618
Mboo_0939
PFAM: SMC domain protein; KEGG: mtp:Mthe_1484 SMC domain protein.
   
 0.599
Mboo_2367
PFAM: protein kinase; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; Tetratricopeptide domain protein; KEGG: ter:Tery_3996 tetratricopeptide TPR_2.
  
 
 0.590
msrA
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
 
 0.582
Mboo_0940
PFAM: metallophosphoesterase; KEGG: mtp:Mthe_1483 metallophosphoesterase.
   
 0.555
Mboo_0438
PFAM: protein phosphatase 2C domain protein; KEGG: mmc:Mmcs_0019 protein serine/threonine phosphatases.
  
 
 0.543
Mboo_0789
Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: mtp:Mthe_0905 heavy metal translocating P-type ATPase.
  
  
 0.543
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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