STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_0794PFAM: Ferritin, Dps family protein; KEGG: tko:TK1999 ferritin-like protein. (162 aa)    
Predicted Functional Partners:
Mboo_2085
TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin, ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein; KEGG: pca:Pcar_2347 desulfoferrodoxin.
  
  
 0.887
Mboo_1133
PFAM: MTH865-like; KEGG: mhu:Mhun_1074 MTH865-like.
  
    0.827
Mboo_0078
PFAM: Carboxymuconolactone decarboxylase; KEGG: mhu:Mhun_2735 alkylhydroperoxidase AhpD core.
  
    0.815
Mboo_1092
KEGG: mhu:Mhun_2398 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like.
  
   0.770
Mboo_1982
KEGG: mac:MA2721 serine O-acetyltransferase / hypothetical protein (multi-domain); TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; protein of unknown function DUF59.
     
 0.679
Mboo_0795
Putative PAS/PAC sensor protein; KEGG: mhu:Mhun_1353 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: TPR repeat-containing protein; response regulator receiver; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
     
 0.635
Mboo_0970
TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: mac:MA3477 ferrous iron transport protein B.
     
 0.517
Mboo_0589
CoB--CoM heterodisulfide reductase; PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: mhu:Mhun_1837 protein of unknown function DUF224, cysteine-rich region.
  
  
 0.514
Mboo_0307
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: cte:CT1101 rubredoxin; Belongs to the rubredoxin family.
  
  
 0.510
Mboo_0562
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: tma:TM0659 rubredoxin; Belongs to the rubredoxin family.
  
  
 0.510
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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