STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_0826PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: mhu:Mhun_1060 AIR synthase related protein. (441 aa)    
Predicted Functional Partners:
sepS
O-phosphoseryl-tRNA(Cys) synthetase; Catalyzes the attachment of O-phosphoserine (Sep) to tRNA(Cys).
  
     0.608
Mboo_0920
PFAM: protein of unknown function DUF201; KEGG: mhu:Mhun_0571 protein of unknown function DUF201.
  
     0.545
Mboo_2244
PFAM: Helix-turn-helix, type 11 domain protein; SMART: regulatory protein, Crp; KEGG: mhu:Mhun_2502 regulatory protein, Crp.
  
     0.532
Mboo_0054
TIGRFAM: riboflavin synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: mhu:Mhun_2476 riboflavin synthase.
  
     0.525
Mboo_0976
PFAM: regulatory protein, ArsR; SMART: regulatory protein, Crp; KEGG: mhu:Mhun_2502 regulatory protein, Crp.
  
     0.524
Mboo_0566
TIGRFAM: tetrahydromethanopterin S-methyltransferase, MtrH subunit; PFAM: Tetrahydromethanopterin S-methyltransferase, MtrH subunit; KEGG: mhu:Mhun_2175 N5-methyltetrahydromethanopterin.
  
     0.511
Mboo_0825
KEGG: mhu:Mhun_0140 hypothetical protein.
       0.507
mfnB
Protein of unknown function DUF556; Catalyzes the formation of 4-(hydroxymethyl)-2- furancarboxaldehyde phosphate (4-HFC-P) from two molecules of glyceraldehyde-3-P (GA-3-P).
  
     0.496
mfnA
Pyridoxal-dependent decarboxylase; Catalyzes the decarboxylation of L-tyrosine to produce tyramine for methanofuran biosynthesis. Can also catalyze the decarboxylation of L-aspartate to produce beta-alanine for coenzyme A (CoA) biosynthesis; Belongs to the group II decarboxylase family. MfnA subfamily.
  
     0.466
Mboo_0215
TIGRFAM: dihydropteroate synthase-related protein; PFAM: dihydropteroate synthase, DHPS; KEGG: mhu:Mhun_2402 dihydropteroate synthase-related protein synthase-related protein.
  
     0.463
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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