STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_0866PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component; KEGG: gsu:GSU2519 (R)-2-hydroxyglutaryl-CoA dehydratase beta-subunit, putative. (383 aa)    
Predicted Functional Partners:
Mboo_0864
TIGRFAM: putative CoA-substrate-specific enzyme activase; PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: sat:SYN_00371 activator of D-2-hydroxyacyl-CoA dehydratase.
 
 0.993
Mboo_2438
TIGRFAM: putative CoA-substrate-specific enzyme activase; PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: mhu:Mhun_2307 CoA enzyme activase.
 
 0.889
Mboo_0865
TIGRFAM: C_GCAxxG_C_C family protein; KEGG: efa:EF0664 hypothetical protein.
 
     0.831
Mboo_0863
PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component; KEGG: sat:SYN_00370 benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB.
 
    
0.718
Mboo_0862
PFAM: OsmC family protein; KEGG: mac:MA4521 hypothetical protein.
       0.623
Mboo_0867
Hypothetical protein.
       0.580
Mboo_0330
PFAM: SirA family protein.
  
    0.477
Mboo_0868
Hypothetical protein.
  
    0.430
Mboo_0873
KEGG: mma:MM3292 hypothetical protein.
  
    0.406
Mboo_0881
Hypothetical protein.
  
    0.406
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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