STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_0879PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mhu:Mhun_1834 4Fe-4S ferredoxin, iron-sulfur binding. (88 aa)    
Predicted Functional Partners:
Mboo_0878
PFAM: molydopterin dinucleotide-binding region; KEGG: mhu:Mhun_1987 molydopterin dinucleotide-binding region.
  
 
 0.971
Mboo_0591
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mhu:Mhun_1835 4Fe-4S ferredoxin, iron-sulfur binding.
 
 
 0.957
Mboo_0924
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: mhu:Mhun_2020 coenzyme F420 hydrogenase/dehydrogenase beta subunit-like.
 
 
  0.939
Mboo_0876
PFAM: Amidohydrolase 3; KEGG: mhu:Mhun_1982 amidohydrolase 3.
  
 
 0.937
Mboo_1470
PFAM: molydopterin dinucleotide-binding region; KEGG: mhu:Mhun_1987 molydopterin dinucleotide-binding region.
  
 
 0.937
Mboo_0875
Formylmethanofuran dehydrogenase; PFAM: glutamate synthase, alpha subunit domain protein; KEGG: mhu:Mhun_1981 formylmethanofuran dehydrogenase.
  
   0.930
Mboo_0877
KEGG: mhu:Mhun_1983 molybdopterin oxidoreductase.
   
   0.916
Mboo_0923
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mba:Mbar_A1561 formate dehydrogenase alpha subunit.
   
  0.895
Mboo_0589
CoB--CoM heterodisulfide reductase; PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: mhu:Mhun_1837 protein of unknown function DUF224, cysteine-rich region.
 
 
 
 0.859
Mboo_1471
KEGG: mhu:Mhun_1988 formylmethanofuran dehydrogenase subunit B.
   
   0.837
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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