STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_0903KEGG: mst:Msp_0554 hypothetical protein. (157 aa)    
Predicted Functional Partners:
Mboo_0902
Hypothetical protein.
       0.773
Mboo_0482
KEGG: mhu:Mhun_1644 transcriptional regulator, ArsR family.
  
     0.655
Mboo_0901
Hypothetical protein.
       0.538
Mboo_1335
CheC, inhibitor of MCP methylation; PFAM: CheC domain protein; KEGG: mhu:Mhun_0110 CheA signal transduction histidine kinases.
   
   0.528
rpl29
PFAM: ribosomal protein L29; KEGG: mhu:Mhun_2246 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
     0.427
Mboo_0279
KEGG: mhu:Mhun_2731 hypothetical protein.
  
    0.412
Mboo_0924
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: mhu:Mhun_2020 coenzyme F420 hydrogenase/dehydrogenase beta subunit-like.
  
     0.410
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.