STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_0954PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: mac:MA0445 iron-sulfur flavoprotein. (184 aa)    
Predicted Functional Partners:
Mboo_0955
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: swo:Swol_0688 metallo cofactor biosynthesis protein.
     
 0.597
Mboo_0958
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: chy:CHY_1211 radical SAM domain protein.
     
 0.597
Mboo_0956
SMART: regulatory protein, AsnC/Lrp family; KEGG: mtp:Mthe_0047 putative transcriptional regulator, AsnC family.
       0.589
Mboo_0957
Putative transcriptional regulator, AsnC family; SMART: regulatory protein, AsnC/Lrp family; KEGG: mba:Mbar_A1459 heme d1 biosynthesis protein precursor NirD.
       0.589
katG
Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
  
  
 0.542
Mboo_0557
PFAM: protein of unknown function DUF106, transmembrane; KEGG: mhu:Mhun_2228 protein of unknown function DUF106, transmembrane.
   
    0.416
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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