STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_0976PFAM: regulatory protein, ArsR; SMART: regulatory protein, Crp; KEGG: mhu:Mhun_2502 regulatory protein, Crp. (263 aa)    
Predicted Functional Partners:
cofC
Protein of unknown function DUF121; Guanylyltransferase that catalyzes the activation of phosphoenolpyruvate (PEP) as enolpyruvoyl-2-diphospho-5'-guanosine, via the condensation of PEP with GTP. It is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor; Belongs to the CofC family.
 
     0.647
Mboo_1353
PFAM: amino acid-binding ACT domain protein; KEGG: mhu:Mhun_2293 amino acid-binding ACT.
  
     0.616
Mboo_1586
PFAM: phosphoesterase, RecJ domain protein; RNA binding S1 domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: mhu:Mhun_1717 phosphoesterase, RecJ-like.
  
     0.582
ef1b
Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.
 
     0.561
Mboo_0557
PFAM: protein of unknown function DUF106, transmembrane; KEGG: mhu:Mhun_2228 protein of unknown function DUF106, transmembrane.
  
     0.554
Mboo_1959
PFAM: Protein of unknown function UPF0179; KEGG: mhu:Mhun_1135 protein of unknown function UPF0179; Belongs to the UPF0179 family.
  
     0.545
Mboo_0005
PFAM: protein of unknown function DUF343; KEGG: mbu:Mbur_1284 protein of unknown function DUF343.
  
     0.543
Mboo_2394
PFAM: phosphoribosyltransferase; KEGG: mhu:Mhun_0973 phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
  
     0.541
Mboo_0826
PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: mhu:Mhun_1060 AIR synthase related protein.
  
     0.524
Mboo_2327
PFAM: Protein of unknown function DUF128; KEGG: mhu:Mhun_2599 hypothetical protein.
  
     0.521
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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