STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_1018PFAM: transcriptional regulator PadR family protein; KEGG: mhu:Mhun_1327 transcriptional regulator, PadR-like family. (166 aa)    
Predicted Functional Partners:
Mboo_1019
KEGG: mhu:Mhun_1529 daunorubicin resistance ABC transporter ATP-binding subunit; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.931
Mboo_1020
TIGRFAM: daunorubicin resistance ABC transporter, inner membrane subunit B; PFAM: ABC-2 type transporter; KEGG: mhu:Mhun_1528 ABC-2.
 
   
 0.838
Mboo_0427
KEGG: mbu:Mbur_0389 daunorubicin resistance ABC transporter, ATPase subunit; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
  
  
 0.671
Mboo_0614
KEGG: mbu:Mbur_0389 daunorubicin resistance ABC transporter, ATPase subunit; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
  
  
 0.671
Mboo_1864
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mhu:Mhun_2518 ABC transporter related.
  
  
 0.671
Mboo_1021
PFAM: protein of unknown function DUF74; KEGG: pto:PTO0347 hypothetical protein; Belongs to the UPF0145 family.
       0.587
Mboo_1017
Hypothetical protein.
       0.509
Mboo_1858
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: mhu:Mhun_1953 MATE efflux family protein.
 
    0.507
Mboo_1679
PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases-like; KEGG: mhu:Mhun_0594 DEAD/DEAH box helicase-like.
 
 
   0.500
Mboo_1289
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mhu:Mhun_1004 ABC transporter related.
 
  
 0.489
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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