STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_1027PFAM: transcriptional regulator TrmB; KEGG: pfu:PF0661 hypothetical protein. (290 aa)    
Predicted Functional Partners:
Mboo_2117
KEGG: mhu:Mhun_2976 thiamine pyrophosphate enzyme-like TPP-binding.
  
    0.693
Mboo_1026
KEGG: mhu:Mhun_2930 hypothetical protein.
       0.543
Mboo_1024
PFAM: protein of unknown function DUF214; KEGG: mhu:Mhun_2932 protein of unknown function DUF214.
       0.541
Mboo_1025
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mhu:Mhun_2931 ABC transporter related.
       0.541
Mboo_1023
PFAM: response regulator receiver; KEGG: mhu:Mhun_1792 multi-sensor signal transduction histidine kinase.
       0.533
Mboo_1028
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: mhu:Mhun_1048 multi-sensor signal transduction histidine kinase.
       0.414
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.