STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbcLRibulose-bisphosphate carboxylase; Catalyzes the addition of molecular CO(2) and H(2)O to ribulose 1,5-bisphosphate (RuBP), generating two molecules of 3- phosphoglycerate (3-PGA). Functions in an archaeal AMP degradation pathway, together with AMP phosphorylase and R15P isomerase. Belongs to the RuBisCO large chain family. Type III subfamily. (430 aa)    
Predicted Functional Partners:
Mboo_2100
SPP-like hydrolase; Catalyzes the dephosphorylation of 2-phosphoglycolate.
    
  0.902
Mboo_0275
PFAM: phosphoribulokinase/uridine kinase; KEGG: mhu:Mhun_0794 phosphoribulokinase/uridine kinase.
 
   
 0.889
Mboo_1838
KEGG: mhu:Mhun_0621 carbonic anhydrase (gamma family Zn(II)-dependent enzymes).
   
 
 0.860
Mboo_2432
KEGG: mhu:Mhun_2314 putative translation initiation factor, aIF-2BII; TIGRFAM: putative translation initiation factor, aIF-2BII family; eIF-2B alpha/beta/delta-related uncharacterized proteins; PFAM: initiation factor 2B related; Belongs to the eIF-2B alpha/beta/delta subunits family.
 
  
 0.831
fbp
Fructose-bisphosphatase; PFAM: Inositol phosphatase/fructose-1,6-bisphosphatase; KEGG: mhu:Mhun_1206 inositol phosphatase/fructose-1,6-bisphosphatase.
 
  
 0.819
Mboo_1801
PFAM: class II aldolase/adducin family protein; KEGG: mhu:Mhun_3173 class II aldolase/adducin-like.
  
  
 0.794
Mboo_1840
Putative translation initiation factor, aIF-2BI family; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). Belongs to the EIF-2B alpha/beta/delta subunits family. MtnA subfamily.
  
  
 0.739
Mboo_0523
Putative thymidine phosphorylase; Catalyzes the conversion of AMP and phosphate to adenine and ribose 1,5-bisphosphate (R15P). Exhibits phosphorylase activity toward CMP and UMP in addition to AMP. Functions in an archaeal AMP degradation pathway, together with R15P isomerase and RubisCO. Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family. Type 2 subfamily.
 
   
 0.601
Mboo_0707
PFAM: Orotidine 5'-phosphate decarboxylase; Dimethylmenaquinone methyltransferase; KEGG: mhu:Mhun_0647 orotidine 5'-phosphate decarboxylase.
     
 0.598
Mboo_1611
KEGG: mbu:Mbur_1969 fructose-bisphosphate aldolase, class-II, putative.
  
  
 0.591
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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