STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_1126KEGG: mma:MM1060 formate hydrogenlyase subunit 4. (313 aa)    
Predicted Functional Partners:
Mboo_1123
PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa; NADH dehydrogenase (ubiquinone), 30 kDa subunit; KEGG: mma:MM1063 formate hydrogenlyase subunit 5 precursor.
 
 
 0.999
Mboo_1122
PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: deh:cbdb_A1652 hydrogenase, group 4, HycG subunit.
 
 
 0.993
Mboo_1124
NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: mac:MA4371 NADH dehydrogenase subunit N.
 
 
 0.990
Mboo_1127
NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: mac:MA4368 NADH dehydrogenase subunit N.
 
 
 0.990
Mboo_1125
KEGG: mma:MM1061 hydrogenase-4 component E.
 
  
 0.973
Mboo_0029
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mhu:Mhun_1746 4Fe-4S ferredoxin, iron-sulfur binding.
  
 
 0.932
Mboo_0026
PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: mhu:Mhun_1743 NADH ubiquinone oxidoreductase, 20 kDa subunit.
  
 
 0.925
Mboo_0028
NADH dehydrogenase (ubiquinone); PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa; KEGG: mhu:Mhun_1745 NADH-ubiquinone oxidoreductase, chain 49kDa; Belongs to the complex I 49 kDa subunit family.
  
 
 0.873
Mboo_1128
PFAM: GCN5-related N-acetyltransferase.
       0.741
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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