STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_1227PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: mhu:Mhun_3212 cobalamin (vitamin B12) biosynthesis CbiG protein. (290 aa)    
Predicted Functional Partners:
cbiD
Cobalamin (vitamin B12) biosynthesis CbiD protein; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.
 
 
 0.999
Mboo_1226
TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mma:MM0995 precorrin-3B C17-methyltransferase.
  
 0.999
Mboo_1228
PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mhu:Mhun_3211 precorrin-4 C11-methyltransferase.
 
 0.999
Mboo_1229
PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mhu:Mhun_3210 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; Belongs to the precorrin methyltransferase family.
 
  
 0.997
Mboo_1225
PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: mhu:Mhun_3214 precorrin-8X methylmutase CbiC/CobH.
 
  
 0.993
Mboo_1223
TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mhu:Mhun_3216 precorrin-6y C5,15-methyltransferase, subunit CbiE.
 
  
 0.986
Mboo_1230
PFAM: Methyltransferase type 11; KEGG: mba:Mbar_A0625 precorrin-8W decarboxylase.
 
  
 0.981
cobQ
Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
 
  
 0.810
Mboo_0703
PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: mhu:Mhun_1589 protein of unknown function DUF102; Belongs to the UPF0284 family.
 
  
 0.793
Mboo_0181
PFAM: protein of unknown function DUF105; cysteine-rich small domain; KEGG: mhu:Mhun_2543 protein of unknown function DUF105.
     
 0.779
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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