STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_1288PFAM: regulatory protein, TetR; KEGG: mma:MM1614 transcriptional regulator, TetR family. (215 aa)    
Predicted Functional Partners:
Mboo_1287
PFAM: beta-lactamase domain protein; KEGG: mhu:Mhun_0673 beta-lactamase-like.
 
  
 0.846
Mboo_1286
PFAM: aldo/keto reductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mba:Mbar_A2639 aldo/keto reductase.
       0.778
Mboo_1289
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mhu:Mhun_1004 ABC transporter related.
     
 0.525
Mboo_1285
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; magnesium-translocating P-type ATPase; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: sat:SYN_02760 Mg(2+) transport ATPase, P-type.
     
 0.495
Mboo_1290
KEGG: mhu:Mhun_1003 hypothetical protein.
       0.484
Mboo_2121
PFAM: PP-loop domain protein; KEGG: mba:Mbar_A2672 hypothetical protein.
 
 
 0.439
Mboo_1291
PFAM: protein of unknown function UPF0118; KEGG: mba:Mbar_A3067 hypothetical protein.
     
 0.417
Mboo_0527
KEGG: mhu:Mhun_2258 cell division GTPase-like.
   
 
 0.401
cetZ
Tubulin/FtsZ, GTPase; Involved in cell shape control; Belongs to the CetZ family.
   
 
 0.401
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
   
 
 0.401
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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