STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_1300PFAM: MscS Mechanosensitive ion channel; KEGG: mhu:Mhun_1569 MscS mechanosensitive ion channel. (343 aa)    
Predicted Functional Partners:
Mboo_1669
NMD3; PFAM: NMD3; KEGG: mhu:Mhun_0828 NMD3.
  
    0.769
kdpC
Potassium-transporting ATPase, A subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex; Belongs to the KdpA family.
     
 0.678
Mboo_1301
TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: mhu:Mhun_0502 hydrogenase expression/formation protein HypD.
       0.569
Mboo_1944
PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: nph:NP6110A trk-type transport system (probable substrate potassium) 2, NAD-binding subunit.
     
 0.529
Mboo_1443
KEGG: mhu:Mhun_1242 acetolactate synthase, large subunit, biosynthetic type; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein.
  
    0.502
Mboo_0073
PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: mhu:Mhun_3231 cytochrome c biogenesis protein, transmembrane region.
 
   
 0.469
Mboo_0081
PFAM: DNA repair protein RadC; KEGG: mhu:Mhun_2739 DNA repair protein RadC; Belongs to the UPF0758 family.
 
    0.446
Mboo_1299
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: mhu:Mhun_0442 hypothetical protein.
  
  
 0.445
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine.
 
    0.430
Mboo_0037
Hypothetical protein; KEGG: mhu:Mhun_2411 peptidase S26B, signal peptidase.
  
  
 0.421
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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