STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_1312PFAM: AMMECR1 domain protein; KEGG: mhu:Mhun_1122 AMMECR1. (191 aa)    
Predicted Functional Partners:
Mboo_2214
PFAM: protein of unknown function DUF52; KEGG: mhu:Mhun_2891 protein of unknown function DUF52; Belongs to the MEMO1 family.
    0.991
Mboo_0759
PFAM: Radical SAM domain protein; KEGG: mhu:Mhun_1052 radical SAM.
     0.976
tgtA
tRNA-guanine transglycosylase, various specificities; Exchanges the guanine residue with 7-cyano-7-deazaguanine (preQ0) at position 15 in the dihydrouridine loop (D-loop) of archaeal tRNAs; Belongs to the archaeosine tRNA-ribosyltransferase family.
 
     0.757
Mboo_2363
PFAM: Radical SAM domain protein; KEGG: mmp:MMP1180 hypothetical protein.
     0.712
Mboo_1314
PFAM: PUA domain containing protein; KEGG: mhu:Mhun_1119 uncharacterized domain 2.
       0.685
Mboo_1315
NAD(P)(+) transhydrogenase (AB-specific); PFAM: alanine dehydrogenase/PNT domain protein; KEGG: aeh:Mlg_2771 NAD(P)(+) transhydrogenase (AB-specific).
       0.510
Mboo_1316
KEGG: aeh:Mlg_2770 pyridine nucleotide transhydrogenase subunit alpha.
       0.445
Mboo_1317
PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: ttj:TTHA0208 nicotinamide nucleotide transhydrogenase, beta subunit.
       0.445
pheT
TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase, B5; KEGG: mhu:Mhun_1728 phenylalanyl-tRNA synthetase, beta subunit.
 
     0.400
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.