STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_1465PFAM: amino acid permease-associated region; KEGG: mta:Moth_0737 amino acid permease-associated region. (488 aa)    
Predicted Functional Partners:
Mboo_2367
PFAM: protein kinase; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; Tetratricopeptide domain protein; KEGG: ter:Tery_3996 tetratricopeptide TPR_2.
  
 0.591
aroE
Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
  
 
 0.528
Mboo_1918
TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mhu:Mhun_2982 phosphate ABC transporter, permease protein PstC.
     
 0.498
Mboo_1466
PFAM: NADPH-dependent FMN reductase; KEGG: rfr:Rfer_2368 NADPH-dependent FMN reductase.
     
 0.422
trpF
PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: mhu:Mhun_1789 N-(5'phosphoribosyl)anthranilate isomerase (PRAI); Belongs to the TrpF family.
   
 
 0.406
Mboo_0434
PFAM: protein of unknown function RIO1; protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: lbu:LBUL_1306 serine/threonine protein kinase with beta-lactam (PASTA) domains.
    
 0.406
Mboo_0635
KEGG: eci:UTI89_C2346 hypothetical protein YegI.
    
 0.406
Mboo_0750
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; Parallel beta-helix repeat; KEGG: pfu:PF0655 serine/threonine-protein kinase.
    
 0.406
Mboo_1321
PFAM: protein kinase; SMART: serine/threonine protein kinase; KEGG: mhu:Mhun_2725 uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains-like.
    
 0.406
Mboo_1970
PFAM: protein kinase; periplasmic copper-binding; SMART: tyrosine protein kinase; serine/threonine protein kinase; Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: mhu:Mhun_0317 serine/threonine protein kinase.
    
 0.406
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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