STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_1484PFAM: KaiC domain protein; KEGG: rsp:RSP_3984 circadian clock protein KaiC. (573 aa)    
Predicted Functional Partners:
Mboo_1485
PFAM: KaiB domain protein; KEGG: mma:MM1091 thiol-disulfide isomerase.
 
     0.908
Mboo_1486
PFAM: KaiB domain protein; KEGG: mma:MM1092 thiol-disulfide isomerase.
 
     0.900
Mboo_1488
PFAM: response regulator receiver; transcriptional regulator PadR family protein; KEGG: mbu:Mbur_2285 response regulator receiver.
     
 0.631
Mboo_1487
KEGG: ana:all2095 two-component sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation/phosphoacceptor; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
     
 0.580
Mboo_1483
Hypothetical protein.
       0.549
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.