STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_1639PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mtp:Mthe_0092 ABC transporter related. (278 aa)    
Predicted Functional Partners:
Mboo_1640
TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: mac:MA4022 cobalt transport protein.
 
 0.998
Mboo_1637
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: mba:Mbar_A2565 cobalamin biosynthesis protein.
 
 0.987
Mboo_1638
KEGG: mba:Mbar_A2564 cobalamin biosynthesis protein.
 
 0.987
Mboo_1295
TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: mma:MM0463 cobalt transport protein.
  
 0.984
cbiM
Cobalamin biosynthesis protein CbiM; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import.
 
 0.967
Mboo_1302
PFAM: cobalt transport protein; KEGG: mac:MA1419 cobalt transport protein.
 
 
 0.916
cbiN
Cobalt transport protein CbiN; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import; Belongs to the CbiN family.
  
 
 0.911
Mboo_1296
Cobalt ABC transporter, ATPase subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
 
  
 
0.910
Mboo_2380
KEGG: mac:MA0879 oligopeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase.
   
0.905
Mboo_1788
PFAM: BioY protein; KEGG: mhu:Mhun_3185 BioY protein.
   
 
 0.846
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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