STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_1665PFAM: Protein of unknown function DUF137; KEGG: mhu:Mhun_0832 hypothetical protein. (243 aa)    
Predicted Functional Partners:
Mboo_1666
PFAM: GHMP kinase; KEGG: mhu:Mhun_0831 GHMP kinase.
 
  
 0.997
Mboo_1667
TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: mhu:Mhun_0830 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase.
 
  
 0.988
mfnA
Pyridoxal-dependent decarboxylase; Catalyzes the decarboxylation of L-tyrosine to produce tyramine for methanofuran biosynthesis. Can also catalyze the decarboxylation of L-aspartate to produce beta-alanine for coenzyme A (CoA) biosynthesis; Belongs to the group II decarboxylase family. MfnA subfamily.
 
  
 0.937
Mboo_1664
KEGG: mhu:Mhun_0833 replication factor C subunit.
 
     0.877
Mboo_1669
NMD3; PFAM: NMD3; KEGG: mhu:Mhun_0828 NMD3.
 
     0.800
Mboo_1670
PFAM: Protein of unknown function DUF424; KEGG: mhu:Mhun_0827 protein of unknown function DUF424.
 
     0.798
Mboo_1668
PFAM: protein of unknown function Met10; KEGG: mhu:Mhun_0829 protein of unknown function Met10.
       0.787
Mboo_1663
Methyltransferase type 11; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mhu:Mhun_0834 UbiE/COQ5 methyltransferase.
       0.780
Mboo_1671
PFAM: TatD-related deoxyribonuclease; KEGG: mhu:Mhun_0826 TatD-related deoxyribonuclease.
 
     0.725
rfcS
Replication factor C; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcS subfamily.
 
     0.594
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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