STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_1671PFAM: TatD-related deoxyribonuclease; KEGG: mhu:Mhun_0826 TatD-related deoxyribonuclease. (275 aa)    
Predicted Functional Partners:
mptD
Protein of unknown function DUF372; Catalyzes the conversion of 7,8-dihydroneopterin (H2Neo) to 6-hydroxymethyl-7,8-dihydropterin (6-HMD); Belongs to the archaeal dihydroneopterin aldolase family.
 
     0.890
Mboo_1669
NMD3; PFAM: NMD3; KEGG: mhu:Mhun_0828 NMD3.
 
     0.854
rfcS
Replication factor C; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcS subfamily.
 
     0.801
Mboo_1673
PFAM: MCM family protein; KEGG: mhu:Mhun_0985 MCM; Belongs to the MCM family.
       0.793
Mboo_1670
PFAM: Protein of unknown function DUF424; KEGG: mhu:Mhun_0827 protein of unknown function DUF424.
 
     0.738
Mboo_1665
PFAM: Protein of unknown function DUF137; KEGG: mhu:Mhun_0832 hypothetical protein.
 
     0.725
rpl40e
PFAM: Ribosomal protein L40e; KEGG: mhu:Mhun_2870 ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.
 
     0.694
Mboo_1314
PFAM: PUA domain containing protein; KEGG: mhu:Mhun_1119 uncharacterized domain 2.
  
     0.673
Mboo_0158
SMART: helix-turn-helix domain protein; KEGG: mhu:Mhun_0152 transcriptional regulator, XRE family.
  
     0.633
Mboo_1666
PFAM: GHMP kinase; KEGG: mhu:Mhun_0831 GHMP kinase.
 
     0.620
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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