STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_1683PFAM: protein of unknown function DUF1624; KEGG: mba:Mbar_A1147 hypothetical protein. (246 aa)    
Predicted Functional Partners:
Mboo_0207
PFAM: sodium/hydrogen exchanger; KEGG: afu:AF1245 Na+/H+ antiporter (NapA-2).
  
    0.598
Mboo_0805
Sodium/hydrogen exchanger; PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: mhu:Mhun_2803 sodium/hydrogen exchanger.
  
    0.598
Mboo_0806
Sodium/hydrogen exchanger; PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: mhu:Mhun_2803 sodium/hydrogen exchanger.
  
    0.598
Mboo_0721
PFAM: Resolvase, N-terminal domain; KEGG: mbu:Mbur_0557 resolvase-like protein.
 
    0.497
Mboo_1286
PFAM: aldo/keto reductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mba:Mbar_A2639 aldo/keto reductase.
   
    0.497
mptA
Protein of unknown function DUF198; Converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate, the first intermediate in the biosynthesis of coenzyme methanopterin.
  
    0.492
Mboo_1682
PFAM: AMP-dependent synthetase and ligase; KEGG: mhu:Mhun_2392 AMP-dependent synthetase and ligase.
       0.437
Mboo_1223
TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mhu:Mhun_3216 precorrin-6y C5,15-methyltransferase, subunit CbiE.
  
    0.410
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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