STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_1696PFAM: protein of unknown function DUF1211; KEGG: rxy:Rxyl_2895 protein of unknown function DUF1211. (220 aa)    
Predicted Functional Partners:
Mboo_1697
PFAM: response regulator receiver; KEGG: mhu:Mhun_1419 multi-sensor signal transduction histidine kinase.
       0.697
Mboo_1698
Response regulator receiver protein; KEGG: mhu:Mhun_1846 multi-sensor signal transduction histidine kinase.
       0.697
Mboo_1699
KEGG: mhu:Mhun_0769 S-layer domain-like.
       0.653
Mboo_1700
KEGG: mhu:Mhun_0769 S-layer domain-like.
       0.643
Mboo_1701
TIGRFAM: efflux transporter, putative, hydrophobe/amphiphile efflux-3 (HAE3) family; KEGG: mhu:Mhun_0768 hydrophobe/amphiphile efflux-3 HAE3.
       0.599
Mboo_1702
KEGG: mhu:Mhun_0769 S-layer domain-like.
       0.503
Mboo_1137
PFAM: isochorismatase hydrolase; KEGG: pfl:PFL_2476 hydrolase, isochorismatase family.
 
     0.405
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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