STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_1737KEGG: mba:Mbar_A1140 hypothetical protein. (469 aa)    
Predicted Functional Partners:
Mboo_1738
KEGG: wbr:WGLp382 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase.
       0.790
hisS
KEGG: mhu:Mhun_2918 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); Anticodon-binding domain protein; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.781
top6A
Spo11/DNA topoisomerase VI, subunit A; Relaxes both positive and negative superturns and exhibits a strong decatenase activity; Belongs to the TOP6A family.
       0.777
top6B
DNA topoisomerase VI, B subunit; Relaxes both positive and negative superturns and exhibits a strong decatenase activity.
       0.773
Mboo_1739
PFAM: transferase hexapeptide repeat containing protein; KEGG: mhu:Mhun_3153 transferase hexapeptide repeat.
       0.686
Mboo_1741
KEGG: mhu:Mhun_3110 acyl carrier protein.
 
     0.673
Mboo_1745
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mhu:Mhun_3155 short-chain dehydrogenase/reductase SDR.
  
  
 0.672
Mboo_1743
PFAM: acyl-protein synthetase, LuxE; KEGG: mhu:Mhun_3112 acyl-protein synthetase, LuxE.
       0.651
Mboo_1740
TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: mhu:Mhun_3109 phosphopantethiene--protein transferase domain.
     
 0.648
Mboo_1742
PFAM: AMP-dependent synthetase and ligase; KEGG: mhu:Mhun_3111 AMP-dependent synthetase and ligase.
  
    0.644
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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