STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_1779PFAM: ABC-2 type transporter; KEGG: tac:Ta0642 putative daunorubicin resistance transport system permease protein. (254 aa)    
Predicted Functional Partners:
Mboo_1780
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tvo:TVN1039 ABC transport system ATP-binding protein.
  
  
 0.902
Mboo_1978
TIGRFAM: uncharacterized domain; PFAM: protein of unknown function DUF181; KEGG: mtp:Mthe_1401 uncharacterized domain protein.
  
  
 0.581
Mboo_0015
PFAM: nitroreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mac:MA2742 nitroreductase.
  
  
 0.455
Mboo_0019
PFAM: nitroreductase; KEGG: swo:Swol_2164 nitroreductase.
  
  
 0.455
Mboo_0390
PFAM: nitroreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mba:Mbar_A3287 nitroreductase.
  
  
 0.455
Mboo_0706
PFAM: nitroreductase; KEGG: mhu:Mhun_0649 nitroreductase.
  
  
 0.455
Mboo_1158
PFAM: nitroreductase; KEGG: pca:Pcar_2755 nitroreductase.
  
  
 0.455
Mboo_1258
PFAM: nitroreductase; KEGG: mac:MA3208 hypothetical protein.
  
  
 0.455
Mboo_1474
Nitroreductase; KEGG: pca:Pcar_2755 nitroreductase.
  
  
 0.455
Mboo_1660
PFAM: nitroreductase; KEGG: mhu:Mhun_0079 nitroreductase.
  
  
 0.455
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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