STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_1789TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; Helix-turn-helix, type 11 domain protein; KEGG: mhu:Mhun_3184 biotin--acetyl-CoA-carboxylase ligase. (326 aa)    
Predicted Functional Partners:
Mboo_1783
TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: mhu:Mhun_3190 acetyl-CoA carboxylase, biotin carboxylase.
 0.998
Mboo_1788
PFAM: BioY protein; KEGG: mhu:Mhun_3185 BioY protein.
 
   
 0.901
Mboo_1790
KEGG: mhu:Mhun_3183 hypothetical protein.
       0.796
Mboo_1784
TIGRFAM: oxaloacetate decarboxylase alpha subunit; PFAM: biotin/lipoyl attachment domain-containing protein; pyruvate carboxyltransferase; Conserved carboxylase region; KEGG: mhu:Mhun_3189 oxaloacetate decarboxylase alpha subunit.
 
     0.745
Mboo_1785
KEGG: mhu:Mhun_3188 hypothetical protein.
       0.745
Mboo_1793
PFAM: protein of unknown function DUF101; KEGG: mhu:Mhun_3180 protein of unknown function DUF101.
 
     0.742
rtcB
PFAM: protein of unknown function UPF0027; KEGG: mhu:Mhun_3181 protein of unknown function UPF0027; Belongs to the RtcB family.
 
   
 0.739
Mboo_1786
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mhu:Mhun_3187 ABC transporter related.
  
    0.703
Mboo_1791
KEGG: mhu:Mhun_3182 hypothetical protein.
       0.702
Mboo_1794
KEGG: mhu:Mhun_3179 hypothetical protein.
       0.693
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.