STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_1831KEGG: mhu:Mhun_2273 protein-L-isoaspartate methyltransferase-like. (241 aa)    
Predicted Functional Partners:
Mboo_1829
PFAM: PUA domain containing protein; KEGG: mhu:Mhun_2275 uncharacterized domain 2.
 
   
 0.892
nac
alpha-NAC related protein; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family.
 
     0.882
Mboo_1828
PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: mhu:Mhun_2276 phosphoesterase, RecJ-like.
 
     0.878
rlmE
Ribosomal RNA methyltransferase RrmJ/FtsJ; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
   
  
 0.778
rps8e
TIGRFAM: ribosomal protein S8e; PFAM: ribosomal protein S8E; KEGG: mhu:Mhun_2485 ribosomal protein S8.e.
 
    0.739
Mboo_2103
TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Nucleolar GTP-binding 1; KEGG: mhu:Mhun_2933 GTP-binding protein, HSR1-related.
  
    0.735
rpl30
TIGRFAM: ribosomal protein L30P; PFAM: ribosomal protein L30; KEGG: mhu:Mhun_2232 ribosomal protein L30P.
   
   0.701
Mboo_1210
PFAM: putative RNA methylase; KEGG: mhu:Mhun_0125 putative RNA methylase.
   
  
 0.695
Mboo_0513
Pseudouridylate synthase; PFAM: PUA domain containing protein; pseudouridylate synthase TruB domain protein; KEGG: mhu:Mhun_2268 pseudouridylate synthase.
  
  
 0.694
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily.
  
  
 0.671
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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