STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_1913PFAM: 4-vinyl reductase, 4VR; KEGG: mka:MK1511 predicted metabolic regulator containing V4R domain. (369 aa)    
Predicted Functional Partners:
Mboo_1324
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mhu:Mhun_1169 radical SAM.
  
  
 0.726
Mboo_2444
PFAM: Radical SAM domain protein; Radical SAM N-terminal domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mtp:Mthe_1538 radical SAM N-terminal domain protein.
  
  
 0.726
Mboo_0109
PFAM: protein of unknown function DUF344; KEGG: ava:Ava_3133 protein of unknown function DUF344.
   
    0.525
Mboo_1051
PFAM: protein of unknown function DUF344; KEGG: mac:MA2391 hypothetical protein.
   
    0.525
Mboo_1052
PFAM: protein of unknown function DUF344; KEGG: mba:Mbar_A2856 hypothetical protein.
   
    0.525
Mboo_1914
KEGG: mhu:Mhun_3166 putative PAS/PAC sensor protein.
       0.512
Mboo_1912
PFAM: response regulator receiver; KEGG: mhu:Mhun_0118 putative PAS/PAC sensor protein.
     
 0.457
Mboo_0637
PFAM: von Willebrand factor, type A; KEGG: ecc:c2599 hypothetical protein YegL.
  
 
 0.430
Mboo_1319
Hypothetical protein; KEGG: eba:p1B320 tellurium resistance protein.
  
 
 0.430
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.