STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_1984PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mhu:Mhun_2219 phosphoadenosine phosphosulfate reductase. (394 aa)    
Predicted Functional Partners:
Mboo_0260
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mhu:Mhun_0461 ABC transporter related.
  
 0.977
Mboo_2126
PFAM: nitrogen-fixing NifU domain protein; KEGG: mhu:Mhun_2214 nitrogen-fixing NifU-like.
  
 0.973
Mboo_0259
PFAM: SufBD protein; KEGG: mhu:Mhun_2849 SufBD.
 
 0.939
Mboo_2054
PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; phosphoadenosine phosphosulfate reductase; KEGG: mhu:Mhun_2219 phosphoadenosine phosphosulfate reductase.
 
  
0.910
Mboo_1985
PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: bha:BH1419 molybdopterin biosynthesis.
  
  
 0.792
Mboo_1982
KEGG: mac:MA2721 serine O-acetyltransferase / hypothetical protein (multi-domain); TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; protein of unknown function DUF59.
  
  
 0.697
Mboo_0356
PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: gvi:gll4384 cysteine desulfurase.
    
0.608
iscS
Aminotransferase, class V; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins.
    
0.608
fdhD
Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
   
  0.550
Mboo_1626
PFAM: RimK domain protein ATP-grasp; KEGG: mtp:Mthe_1695 RimK domain protein ATP-grasp.
  
 
 0.406
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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