STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_2005KEGG: tde:TDE1508 hypothetical protein. (162 aa)    
Predicted Functional Partners:
Mboo_2006
PFAM: protein of unknown function DUF214; KEGG: sth:STH855 ABC transporter permease protein.
       0.773
Mboo_2007
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH856 ABC transporter ATP-binding protein.
       0.773
nifH-2
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
       0.412
Mboo_2009
Nitrogenase; PFAM: oxidoreductase/nitrogenase, component 1; KEGG: rru:Rru_A0794 nitrogenase.
       0.412
Mboo_2010
Nitrogenase; PFAM: oxidoreductase/nitrogenase, component 1; KEGG: rpa:RPA2637 possible nitrogenase iron-molybdenum protein subunit NifK homolog; Belongs to the NifD/NifK/NifE/NifN family.
       0.412
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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