STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_2006PFAM: protein of unknown function DUF214; KEGG: sth:STH855 ABC transporter permease protein. (395 aa)    
Predicted Functional Partners:
Mboo_2007
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH856 ABC transporter ATP-binding protein.
 
 
 0.962
Mboo_1025
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mhu:Mhun_2931 ABC transporter related.
 
 
 0.877
Mboo_0756
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mhu:Mhun_0321 ABC transporter related.
 
 
 0.876
Mboo_1647
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mhu:Mhun_0321 ABC transporter related.
 
 
 0.873
Mboo_0060
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mhu:Mhun_2931 ABC transporter related.
 
 
 0.871
Mboo_0165
Heme exporter protein CcmA; KEGG: gsu:GSU1341 ABC transporter, ATP-binding protein; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.854
Mboo_2005
KEGG: tde:TDE1508 hypothetical protein.
       0.773
Mboo_2113
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mhu:Mhun_2981 ABC transporter related.
  
 
 0.705
Mboo_2371
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mac:MA1227 ABC transporter, ATP-binding protein.
  
 
 0.705
Mboo_1646
PFAM: protein of unknown function DUF214; KEGG: mhu:Mhun_2932 protein of unknown function DUF214.
  
     0.679
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.