STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_2016Putative PAS/PAC sensor protein; KEGG: tbd:Tbd_2634 putative diguanylate cyclase (GGDEF domain); TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein. (589 aa)    
Predicted Functional Partners:
Mboo_1622
KEGG: mhu:Mhun_1267 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
     0.687
Mboo_1107
KEGG: mhu:Mhun_0440 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
     0.683
Mboo_1520
KEGG: mhu:Mhun_1420 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
     0.655
Mboo_1244
KEGG: mhu:Mhun_1415 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
     0.647
dacZ
Putative PAS/PAC sensor protein; Diadenylate cyclase that catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c-di-AMP is a second messenger for intracellular signal transduction involved in the control of important regulatory processes such as osmoregulation.
 
     0.612
Mboo_0295
KEGG: mhu:Mhun_1048 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
     0.583
Mboo_2079
KEGG: ret:RHE_CH02005 putative sensory box/GGDEF family protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; SMART: PAS domain containing protein.
 
     0.560
Mboo_0467
KEGG: mhu:Mhun_1739 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
     0.516
Mboo_1808
KEGG: mth:MTH457 sensory transduction regulatory protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
     0.506
Mboo_0782
Multi-sensor signal transduction histidine kinase; KEGG: mhu:Mhun_1958 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: extracellular solute-binding protein, family 3; ATP-binding region, ATPase domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
     0.466
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.