STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_2086PFAM: beta-lactamase domain protein; KEGG: mhu:Mhun_0795 beta-lactamase-like. (394 aa)    
Predicted Functional Partners:
Mboo_2085
TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin, ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein; KEGG: pca:Pcar_2347 desulfoferrodoxin.
  
 0.959
Mboo_0454
TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: mhu:Mhun_0966 hemerythrin-like, metal-binding.
  
  
 0.693
Mboo_1439
Nitrite and sulphite reductase 4Fe-4S region; PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: mhu:Mhun_1737 nitrite and sulphite reductase 4Fe-4S region.
  
  
 0.590
Mboo_2084
PFAM: cation transporter; KEGG: tko:TK1182 trk-type pottasium transport system, membrane component.
     
 0.572
Mboo_2276
PFAM: Rubrerythrin; KEGG: mhu:Mhun_1311 rubrerythrin.
 
  
 0.524
Mboo_0082
PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: mhu:Mhun_2740 rubrerythrin.
  
  
 0.511
Mboo_0610
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mac:MA0616 2-cys peroxiredoxin, subunit A.
 
   
 0.499
Mboo_0794
PFAM: Ferritin, Dps family protein; KEGG: tko:TK1999 ferritin-like protein.
  
  
 0.477
Mboo_2081
PFAM: oxidoreductase/nitrogenase, component 1; KEGG: mac:MA1220 nitrogenase associated protein N.
  
  
 0.463
Mboo_2082
PFAM: oxidoreductase/nitrogenase, component 1; KEGG: mba:Mbar_A2703 nitrogen fixation protein NifH/NifE.
  
  
 0.463
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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