STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_2182PFAM: NAD(P)H dehydrogenase (quinone); KEGG: pca:Pcar_2448 predicted iron-sulfur flavoprotein. (456 aa)    
Predicted Functional Partners:
Mboo_2183
KEGG: rpa:RPA2585 hypothetical protein.
       0.773
Mboo_2181
TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: cac:CA_P0091 predicted regulator of stationary/sporulation gene expression.
 
     0.761
Mboo_2180
PFAM: glycoside hydrolase, family 18; SMART: chitinase II.
       0.526
Mboo_1653
PFAM: protein of unknown function DUF125, transmembrane; KEGG: tma:TM0497 hypothetical protein.
  
     0.438
Mboo_0557
PFAM: protein of unknown function DUF106, transmembrane; KEGG: mhu:Mhun_2228 protein of unknown function DUF106, transmembrane.
   
    0.416
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.