STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_2280PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: aor:AO090005000990 predicted protein Pfam: Zn_clus Methyltransf_11 Methyltransf_12 PROSITE: ZN2_CY6_FUNGAL_1 ZN2_CY6_FUNGAL_2. (249 aa)    
Predicted Functional Partners:
rps5
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.
    
 0.848
rps24e
KEGG: mma:MM0599 SSU ribosomal protein S24E; Belongs to the eukaryotic ribosomal protein eS24 family.
  
 0.797
rps3ae
PFAM: ribosomal protein S3Ae; KEGG: mhu:Mhun_2508 ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family.
  
  0.735
rps4e
Ribosomal protein S4E, central; PFAM: RNA-binding S4 domain protein; KOW domain protein; Ribosomal protein S4E-like; Ribosomal protein S4E, central; KEGG: mhu:Mhun_2241 ribosomal protein S4E; Belongs to the eukaryotic ribosomal protein eS4 family.
   
  0.712
rps12
Ribosomal protein S23 (S12); With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.
  
  0.698
rps17
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
 0.695
rps4
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 0.692
rps8
Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.
   
  0.691
rps15
PFAM: ribosomal protein S15; Ribosomal S13S15-like; KEGG: mhu:Mhun_2511 ribosomal S13S15-like.
  
  0.690
rps19
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
    
  0.664
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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