STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_2285PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mhu:Mhun_1464 ABC transporter related. (296 aa)    
Predicted Functional Partners:
Mboo_2286
PFAM: Abortive infection protein; KEGG: mhu:Mhun_1463 hypothetical protein.
  
  
 0.728
Mboo_2287
KEGG: mhu:Mhun_1462 hypothetical protein.
  
  
 0.728
Mboo_2277
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH2015 ABC transporter ATP-binding protein.
0.632
Mboo_2278
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: bfr:BF3144 ABC transporter ATP-binding protein.
0.630
Mboo_1858
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: mhu:Mhun_1953 MATE efflux family protein.
  
  
 0.596
rpl2
Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
 
 
   0.545
Mboo_0613
PFAM: ABC-2 type transporter; KEGG: aba:Acid345_4575 ABC multidrug efflux pump, inner membrane subunit.
 
  
 0.522
Mboo_0426
PFAM: ABC-2 type transporter; KEGG: mhu:Mhun_0223 ABC-2.
  
 0.520
Mboo_1020
TIGRFAM: daunorubicin resistance ABC transporter, inner membrane subunit B; PFAM: ABC-2 type transporter; KEGG: mhu:Mhun_1528 ABC-2.
  
 0.520
Mboo_2349
PFAM: H+-transporting two-sector ATPase, C subunit; KEGG: mhu:Mhun_1179 H+-transporting two-sector ATPase, C subunit.
   
 
 0.485
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.