STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_2313PFAM: protein of unknown function DUF1486; KEGG: mac:MA1575 hypothetical protein. (145 aa)    
Predicted Functional Partners:
Mboo_2315
PFAM: Rieske [2Fe-2S] domain protein; KEGG: bxe:Bxe_C0940 putative Rieske (2Fe-2S) ferredoxin.
 
     0.635
Mboo_2314
PFAM: protein of unknown function DUF1271; SMART: zinc finger, CDGSH-type domain protein; KEGG: mba:Mbar_A3576 hypothetical protein.
       0.590
Mboo_2312
PFAM: transcriptional regulator TrmB; KEGG: mma:MM0146 transcriptional regulator.
       0.562
Mboo_0609
PFAM: Mg2+ transporter protein, CorA family protein; KEGG: cac:CAC1852 magnesium and cobalt transport protein.
  
     0.402
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.